Find Pathways By Text — findPathwaysByText • rWikiPathways
Description: Retrieve pathways containing the query text.

# Find Pathways By Text

Source: `R/findPathwayByText.R`
`findPathwaysByText.Rd`

Retrieve pathways containing the query text.

    findPathwaysByText(query)

## Arguments

query | A `character` string to search for, e.g., "cancer"

## Value

A `dataframe` of pathway attributes in addition to query result score

## Details

The score is from a lucene index search engine, ranging from 0 to 1 with higher scores for better matches.

## Examples

    {
    findPathwaysByText('cancer')
    }
    #>           score     id                                                   url
    #>   1: 1.48345970 WP1984 https://www.wikipathways.org/index.php/Pathway:WP1984
    #>   2: 1.48345970 WP3260 https://www.wikipathways.org/index.php/Pathway:WP3260
    #>   3: 1.29852510 WP2868 https://www.wikipathways.org/index.php/Pathway:WP2868
    #>   4: 1.23793510 WP4262 https://www.wikipathways.org/index.php/Pathway:WP4262
    #>   5: 1.20841570 WP3252 https://www.wikipathways.org/index.php/Pathway:WP3252
    #>  ---
    #> 115: 0.02568957  WP566  https://www.wikipathways.org/index.php/Pathway:WP566
    #> 116: 0.02201963 WP3265 https://www.wikipathways.org/index.php/Pathway:WP3265
    #> 117: 0.02201963 WP2355 https://www.wikipathways.org/index.php/Pathway:WP2355
    #> 118: 0.01834969 WP4857 https://www.wikipathways.org/index.php/Pathway:WP4857
    #> 119: 0.01834969 WP4754 https://www.wikipathways.org/index.php/Pathway:WP4754
    #>                                                                   name
    #>   1:                                  Integrated Breast Cancer Pathway
    #>   2:                                  Integrated Breast Cancer Pathway
    #>   3: TCA Cycle Nutrient Utilization and Invasiveness of Ovarian Cancer
    #>   4:                                             Breast cancer pathway
    #>   5: TCA Cycle Nutrient Utilization and Invasiveness of Ovarian Cancer
    #>  ---
    #> 115:                                           Canonical wnt signaling
    #> 116:                                   Corticotropin-releasing hormone
    #> 117:                 Corticotropin-releasing hormone signaling pathway
    #> 118:                                                Endothelin Pathway
    #> 119:                                           IL-18 signaling pathway
    #>           species revision
    #>   1: Homo sapiens   113594
    #>   2:   Bos taurus   113595
    #>   3: Homo sapiens   112051
    #>   4: Homo sapiens   108103
    #>   5:   Bos taurus   108105
    #>  ---
    #> 115:  Danio rerio    96484
    #> 116:   Bos taurus   108255
    #> 117: Homo sapiens   108254
    #> 118: Homo sapiens   111629
    #> 119: Homo sapiens   115147