Deprecated functions in package DEGreport — DEGreport-package • DEGreport
Description: These functions are provided for compatibility with older versions of DEGreport only and will be defunct at the next release.

# Deprecated functions in package DEGreport

`DEGreport-deprecated.Rd`

These functions are provided for compatibility with older versions of DEGreport only and will be defunct at the next release.

## Details

The following functions are deprecated and will be made defunct; use the replacement indicated below:

- degRank, degPR, degBIcmd, degBI, degFC, degComb, degNcomb: DESeq2::lcfShrink. This function was trying to avoid big FoldChange in variable genes. There are other methods nowadays like lcfShrink function. DEGreport

## See also

Useful links:

- http://lpantano.github.io/DEGreport/

- Report bugs at https://github.com/lpantano/DEGreport/issues